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  1. 1.
    MetaScope::align_details
    A universal parameter settings object for Rsubread alignment
    csv| json| rda| rds
    list
  2. 2.
    MetaScope::bt2_16S_params
    A universal parameter object for Bowtie 2 16S alignment
    json| rda| rds
    character
  3. 3.
    MetaScope::bt2_missing_params
    A universal parameter object for Bowtie 2 metagenomic alignment where the host genome is thought to be absent from the reference database
    json| rda| rds
    character
  4. 4.
    MetaScope::bt2_regular_params
    A universal parameter object for Bowtie 2 metagenomic or non-16S alignment
    json| rda| rds
    character